Baseline and Tutorial¶

We have created a SimpleITK baseline model that is available here. The code also includes functions for loading the .h5 files, visualizing volumes, visualizing results, and visualizing deformation fields. Our baseline model is an affine SimpleITK model whose parameters can be found in build.py. Straightforward ways of improving this model are 1) experimenting with different parameters, and 2) adding in a non-rigid component such as Free Form deformation, BSpline based deformation, or Demons. A tutorial for implementing these advanced methods can be found here.